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Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof H-P.  2013.  NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics (Oxford, England). 29(13):1702-3.
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Backes C, Rurainski A, Klau G, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M et al..  2011.  An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res. 40(6):e43