Publications

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2008
Keller A, Backes C, Al-Awadhi M, Gerasch A, Kuntzer J, Kohlbacher O, Kaufmann M, Lenhof H.  2008.  GeneTrailExpress: a web-based pipeline for the statistical evaluation of microarray experiments. BMC Bioinformatics. 9:552. Abstract
2009
Keller A, Backes C, Gerasch A, Kaufmann M, Kohlbacher O, Lenhof H.  2009.  A novel algorithm for detecting differentially regulated paths based on Gene Set Enrichment Analysis. Bioinformatics. Abstract
2011
Backes C, Rurainski A, Klau G, Müller O, Stöckel D, Gerasch A, Küntzer J, Maisel D, Ludwig N, Hein M et al..  2011.  An integer linear programming approach for finding deregulated subgraphs in regulatory networks. Nucleic Acids Res. 40(6):e43
2012
Laczny C, Leidinger P, Haas J, Ludwig N, Backes C, Gerasch A, Kaufmann M, Vogel B, Katus H-A, Meder B et al..  2012.  miRTrail - a comprehensive webserver for analyzing gene and miRNA patterns to enhance the understanding of regulatory mechanisms in diseases. BMC Bioinformatics. BMC Bioinformatics. 13(1):36
2013
Stöckel D, Müller O, Kehl T, Gerasch A, Backes C, Rurainski A, Keller A, Kaufmann M, Lenhof H-P.  2013.  NetworkTrail--a web service for identifying and visualizing deregulated subnetworks. Bioinformatics (Oxford, England). 29(13):1702-3.
Bekos M, Kaufmann M, Kobourov S, Symvonis A.  2013.  Smooth Orthogonal Layouts. Journal of Graph Algorithms and Applications. 17:575-595.
2014
Gerasch A, Faber D, Küntzer J, Niermann P, Kohlbacher O, Lenhof H-P, Kaufmann M.  2014.  BiNA: a visual analytics tool for biological network data.
Bekos MA, Kaufmann M, Kobourov S, Veeramoni S.  2014.  A note on maximum differential coloring of planar graphs. Journal of Discrete Algorithms. 29:1-7.
2015
Gerasch A, Küntzer J, Niermann P, Stöckel D, Kaufmann M, Kohlbacher O, Lenhof H-P.  2015.  Network-based interactive navigation and analysis of large biological datasets. it - Information Technology. 57(1):37-48.